What will the following command do?
16. What will the following command do?
fastqc /data/compres/seq_platform_data/illumina.fq
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It will fail because I haven’t specified an output directory and do not have write permission
on the /data/CompRes/seq_platform_data/ directory
It will fail because I haven’t moved the illumina.fq file to my home directory
It will fail because I haven’t specified trimming parameters
17.If the user mwilsons were to run this command, what would the following command do?
fastqc /data/compres/seq_platform_data/illumina.fq -o /home/mwilsons/BIO439/module
4/
It will fail because I haven’t moved the illumina.fq file to my home directory
It will run and output a trimmed fastq file to the directory:
/home/mwilsons/BIO439/module4/
It will run and output one file:
illumina_fastqc.html
to the directory:
/home/mwilsons/BIO439/module4/
It will run and output two files:
illumina_fastqc.html
illumina_fastqc.zip
to the directory: